Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10403306 chr19:37375279 C/T 6.99E-7 178 25.1 23.82 25.6 KM Plot
PCPG rs10416924 chr19:19719840 A/G 0.000376 176 24.93 27.78 20.25 KM Plot
PCPG rs10417097 chr19:19719824 C/G 0.000382 178 20.25 28.3 24.7 KM Plot
PCPG rs10419415 chr19:2868842 G/A 0.000312 173 25.77 16.97 116.37 KM Plot
PCPG rs1042712 chr2:136545844 C/G 2.26E-5 178 9.72 24.98 25.77 KM Plot
PCPG rs1045452 chr12:6572048 A/G 0.000132 171 19.57 27.23 24.85 KM Plot
PCPG rs1045548 chr12:6570966 C/T 0.000237 178 25.87 25.47 19.3 KM Plot
PCPG rs10459546 chr14:74419247 A/T 4.78E-6 172 25 30.33 10.43 KM Plot
PCPG rs10459547 chr14:74419642 G/T 4.63E-6 173 25.17 29.7 10.43 KM Plot
PCPG rs10459894 chr17:74696030 A/T 0.000283 171 25.77 25.53 8.33 KM Plot
PCPG rs1046914 chr10:1228206 T/C 0.000253 172 23.48 25.87 25.17 KM Plot
PCPG rs10483856 chr14:74365295 C/T 9.42E-6 178 10.43 27.23 25.47 KM Plot
PCPG rs10490630 chr2:118687240 C/T 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs10490631 chr2:118678439 C/T 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs10491079 chr10:131960803 C/T 0 178 25.53 24.47 3.17 KM Plot